Return the time series information from an iteration

Source: R/get-results.r

Extract and return time series from an r4ss::SS_output() list, that is read in from the estimation method of a single iteration. The main time series information is included but no information about the uncertainty of those measurements is available. See the derived quantities for uncertainty.

get_results_timeseries(report.file)

Arguments

report.file

An SS_output list for a model (operating model or estimation model).

Value

A data frame with the following columns:

  • year

  • Area

  • Seas

  • Bio_smry

  • SpawnBio

  • Recruit_0

  • retainB_0-9+

  • retainN_0-9+

  • deadB_0-9+

  • deadN_0-9+

  • F_0-9+

  • SPRratio

  • rec_dev

  • raw_rec_dev

Details

Information about both season and area are included in the data frame. For values that have no associated season or area, i.e., are summary values over all areas and seasons, the values are repeated for each area/season combination within a given year. For example, the recruitment deviation is for all areas and is thus repeated in each row across areas for a given year.

Author

Cole Monnahan